Package index • dominatR

Normalization methods

cpm_normalization(): Counts Per Million normalization

minmax_normalization(): Min-Max Normalization

quantile_normalization(): Quantile Normalization

rpkm_normalization(): RPKM Normalization

tpm_normalization(): TPM Normalization

Calculation functions

centmass(): Compute the "center of mass" for rows of a data frame or SummarizedExperiment

entropy(): Compute Shannon Entropy on row-normalized data

Qentropy(): Compute Q-Entropy using existing row-normalized data + Entropy

Feature dominance plots

plot_triangle(): Triangle (ternary) dominance plot

plot_circle(): Circular Dominance Plot (More than 3 variables)

plot_circle_frequency(): Dominance–Entropy Frequency Plot

plot_rope(): Rope (binary) dominance plot